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Ss2 Class Reference

Calculate structural scores with info derived from PSI-PRED. More...

+ Inheritance diagram for Ss2:
+ Collaboration diagram for Ss2:

Public Member Functions

 Ss2 (SubMatrix *subStr, AlignmentData *ad, Ss2Input *psipred1, Ss2Input *psipred2, double cSs2)
 Default constructor.
 
 Ss2 (const Ss2 &orig)
 Copy constructor.
 
virtual ~Ss2 ()
 Destructor.
 
virtual void copy (const Ss2 &orig)
 Copy orig object to this object ("deep copy"). More...
 
virtual void copy (const Structure &orig)
 Copy orig object to this object ("deep copy").
 
virtual Ss2newCopy ()
 Construct a new "deep copy" of this object. More...
 
Ss2operator= (const Ss2 &orig)
 Assignment operator.
 
virtual void reverse ()
 Reverse template secondary structure.
 
virtual double scoringStr (int i, int j)
 Calculate structural scores to create matrix values. More...
 

Data Fields

SubMatrixsubStr
 Structural substitution matrix.
 

Detailed Description

Calculate structural scores with info derived from PSI-PRED.

Member Function Documentation

void copy ( const Ss2 orig)
virtual

Copy orig object to this object ("deep copy").

Parameters
orig
Ss2 * newCopy ( )
virtual

Construct a new "deep copy" of this object.

Returns

Implements Structure.

double scoringStr ( int  i,
int  j 
)
virtual

Calculate structural scores to create matrix values.

Parameters
i
j
Returns

Implements Structure.


The documentation for this class was generated from the following files: