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ProfInput Class Reference

Implement I/O objects for handling PHD files. More...

Public Member Functions

 ProfInput ()
 Default constructor.
 
 ProfInput (istream &is)
 istream constructor.
 
 ProfInput (const ProfInput &orig)
 Copy constructor.
 
virtual ~ProfInput ()
 Destructor.
 
virtual void copy (const ProfInput &orig)
 Copy orig object to this object ("deep copy"). More...
 
char getProfBE (int i)
 Return the ASA prediction of Prof.
 
char getProfMixSSBE (char ssChar, char beChar)
 Return the charachter for SSE/ASA combination. More...
 
char getProfSS (int i)
 Return the SSE prediction of Prof.
 
virtual ProfInputnewCopy ()
 Construct a new "deep copy" of this object. More...
 
ProfInputoperator= (const ProfInput &orig)
 Assignment operator. More...
 
virtual unsigned int size () const
 Return the size of the object referred as the number of aminoacids.
 

Static Public Member Functions

static void pReadString (istream &is, string &data1, string &data2, string &data3)
 Helper function used to read a string construct. More...
 
static void pWriteString (ostream &os, string data1, string data2, string data3)
 Helper function used to write a string construct. More...
 

Friends

ostream & operator<< (ostream &os, const ProfInput &object)
 Output operator. More...
 
istream & operator>> (istream &is, ProfInput &object)
 Input operator. More...
 

Detailed Description

Implement I/O objects for handling PHD files.

Member Function Documentation

void copy ( const ProfInput orig)
virtual

Copy orig object to this object ("deep copy").

Parameters
orig
char getProfMixSSBE ( char  ssChar,
char  beChar 
)

Return the charachter for SSE/ASA combination.

Parameters
ssChar
beChar
Returns
ProfInput * newCopy ( )
virtual

Construct a new "deep copy" of this object.

Returns
ProfInput & operator= ( const ProfInput orig)

Assignment operator.

Parameters
orig
Returns
void pReadString ( istream &  is,
string &  data1,
string &  data2,
string &  data3 
)
static

Helper function used to read a string construct.

Parameters
is
data1
data2
data3
void pWriteString ( ostream &  os,
string  data1,
string  data2,
string  data3 
)
static

Helper function used to write a string construct.

Parameters
os
data1
data2
data3

Friends And Related Function Documentation

ostream& operator<< ( ostream &  os,
const ProfInput object 
)
friend

Output operator.

Parameters
os
object
Returns
istream& operator>> ( istream &  is,
ProfInput object 
)
friend

Input operator.

Parameters
is
object
Returns

The documentation for this class was generated from the following files: