Victor
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Calculate structural scores with info derived from PHD. More...
Public Member Functions | |
Prof (SubMatrix *subStr, ProfInput *phd1, ProfInput *phd2, double cPrf) | |
Default constructor. More... | |
Prof (const Prof &orig) | |
Copy constructor. | |
virtual | ~Prof () |
Destructor. | |
virtual void | copy (const Prof &orig) |
Copy orig object to this object ("deep copy"). More... | |
virtual void | copy (const Structure &orig) |
Copy orig object to this object ("deep copy"). | |
virtual Prof * | newCopy () |
Construct a new "deep copy" of this object. More... | |
Prof & | operator= (const Prof &orig) |
Assignment operator. More... | |
virtual void | reverse () |
Reverse template structural components. | |
virtual double | scoringStr (int i, int j) |
Calculate structural scores to create matrix values. More... | |
Data Fields | |
SubMatrix * | subStr |
Structural substitution matrix. | |
Calculate structural scores with info derived from PHD.
Default constructor.
subStr | |
phd1 | |
phd2 | |
cPrf |
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virtual |
Copy orig object to this object ("deep copy").
orig |
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virtual |
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virtual |