21 #include <ProfInput.h>
22 #include <Structure.h>
24 namespace Victor {
namespace Align2{
virtual ~Prof()
Destructor.
Definition: Prof.cc:43
Prof(SubMatrix *subStr, ProfInput *phd1, ProfInput *phd2, double cPrf)
Default constructor.
Definition: Prof.cc:35
Implement a standard substitution matrix.
Definition: SubMatrix.h:30
virtual void copy(const Prof &orig)
Copy orig object to this object ("deep copy").
Definition: Prof.cc:92
Base class for structural scores.
Definition: Structure.h:32
virtual double scoringStr(int i, int j)
Calculate structural scores to create matrix values.
Definition: Prof.cc:70
Calculate structural scores with info derived from PHD.
Definition: Prof.h:31
SubMatrix * subStr
Structural substitution matrix.
Definition: Structure.h:82
virtual Prof * newCopy()
Construct a new "deep copy" of this object.
Definition: Prof.cc:103
Prof & operator=(const Prof &orig)
Assignment operator.
Definition: Prof.cc:54