Difference between revisions of "References"

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Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.
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<br>Benkert P., Tosatto S. C. E., Schwede T. 
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<br>(2009) '''Proteins 77 '''(Suppl 9):173-180.
 +
 
TAP score: Torsion angle propensity normalization applied to local protein structure evaluation
 
TAP score: Torsion angle propensity normalization applied to local protein structure evaluation
 
<br>Tosatto, S.C.E ., Battistutta, R.
 
<br>Tosatto, S.C.E ., Battistutta, R.
 
<br>(2007) '''BMC Bioinformatics''', 8, art. no. 155.
 
<br>(2007) '''BMC Bioinformatics''', 8, art. no. 155.
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 +
Metodologie profilo-profilo per l’allineamento di sequenze proteiche.
 +
<br>Negri E.
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<br>(2007/2008) Padua@thesis, http://tesi.cab.unipd.it/.
  
 
Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping
 
Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping
Line 10: Line 18:
 
<br>Albiero, A ., Tosatto, S.C.E.
 
<br>Albiero, A ., Tosatto, S.C.E.
 
<br>(2006) '''Current Drug Discovery Technologies''', 3 (1), pp. 75-81.
 
<br>(2006) '''Current Drug Discovery Technologies''', 3 (1), pp. 75-81.
 +
 +
Large-Scale Prediction of Protein Structure and Function from Sequence.
 +
<br>Tosatto S. C. E., Toppo S.
 +
<br>(2006) '''Current Pharmaceutical Design''', 12, 2067-2086.
  
 
The Victor/FRST function for model quality estimation
 
The Victor/FRST function for model quality estimation
 
<br>Tosatto, S.C.E.
 
<br>Tosatto, S.C.E.
 
<br>(2005) '''Journal of Computational Biology''', 12 (10), pp. 1316-1327.
 
<br>(2005) '''Journal of Computational Biology''', 12 (10), pp. 1316-1327.
 +
 +
Allineamenti inversi e selezione energetica di strutture proteiche. Tesi,
 +
<br>Albiero A.
 +
<br>(2004/2005) Università degli Studi di Padova.
  
 
A divide and conquer approach to fast loop modeling
 
A divide and conquer approach to fast loop modeling
 
<br>Tosatto, S.C.E ., Bindewald, E ., Hesser, J ., Männer, R.
 
<br>Tosatto, S.C.E ., Bindewald, E ., Hesser, J ., Männer, R.
 
<br>(2002) '''Protein Engineering''', 15 (4), pp. 279-286.
 
<br>(2002) '''Protein Engineering''', 15 (4), pp. 279-286.
 +
 +
Protein secondary structure prediction based on position-specific scoring matrices.
 +
<br>Jones D.T.
 +
<br>(1999) '''Journal of Molecular Biology''' 292(2):195-202.
 +
 +
Position-based sequence weights.
 +
<br>Henikoff S., Henikoff J.G.
 +
<br>(1994)  '''Journal of Molecular Biology''' 243:574-578

Revision as of 10:43, 19 August 2014

Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust.
Benkert P., Tosatto S. C. E., Schwede T.
(2009) Proteins 77 (Suppl 9):173-180.

TAP score: Torsion angle propensity normalization applied to local protein structure evaluation
Tosatto, S.C.E ., Battistutta, R.
(2007) BMC Bioinformatics, 8, art. no. 155.

Metodologie profilo-profilo per l’allineamento di sequenze proteiche.
Negri E.
(2007/2008) Padua@thesis, http://tesi.cab.unipd.it/.

Align: a C++ Class Library and Web Server for Rapid Sequence Alignment Prototyping
Silvio C.E. Tosatto, Alessandro Albiero, Alessandra Mantovan, Carlo Ferrari, Eckart Bindewald and Stefano Toppo Pages 167-173 (7)
(2006) Current Drug Discovery Technologies. 3(3), pp. 167-73.

Fine-grained statistical torsion angle potentials are effective in discriminating native protein structures
Albiero, A ., Tosatto, S.C.E.
(2006) Current Drug Discovery Technologies, 3 (1), pp. 75-81.

Large-Scale Prediction of Protein Structure and Function from Sequence.
Tosatto S. C. E., Toppo S.
(2006) Current Pharmaceutical Design, 12, 2067-2086.

The Victor/FRST function for model quality estimation
Tosatto, S.C.E.
(2005) Journal of Computational Biology, 12 (10), pp. 1316-1327.

Allineamenti inversi e selezione energetica di strutture proteiche. Tesi,
Albiero A.
(2004/2005) Università degli Studi di Padova.

A divide and conquer approach to fast loop modeling
Tosatto, S.C.E ., Bindewald, E ., Hesser, J ., Männer, R.
(2002) Protein Engineering, 15 (4), pp. 279-286.

Protein secondary structure prediction based on position-specific scoring matrices.
Jones D.T.
(1999) Journal of Molecular Biology 292(2):195-202.

Position-based sequence weights.
Henikoff S., Henikoff J.G.
(1994) Journal of Molecular Biology 243:574-578