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List of some of the Applications using the package

Online Service Description Reference
Align Pairwise protein sequence alignment and analysis server 2006, Curr Drug Discov Technol.
RING Residue interaction network generation method for Cytoscape 2011, Bioinformatics
TAP Validate the local torsion angles for protein structures 2007, BMC Bioinformatics
QMEAN Protein model quality estimation based on a comprehensive evaluation 2008, Proteins
Homer Homology Modeling server, automatic template selection Submitted
LOBO Loop modelling server for protein structures 2002, Protein Eng.
FRST Protein model quality estimation method based on energy evaluation 2005, J Comput Biol.
NeEMO NEtwork Enthalpic MOdelling. Evaluation of stability changes 2014, BMC Genomics